Global Proteome and Ubiquitinome Changes in the Soluble and Insoluble Fractions of Q175 Huntington Mice Brains.

Global Proteome and Ubiquitinome Changes in the Soluble and Insoluble Fractions of Q175 Huntington Mice Brains.

Publication date: May 28, 2019

Huntington’s disease is caused by a polyglutamine repeat expansion in the huntingtin protein which affects the function and folding of the protein, and results in intracellular protein aggregates. Here, we examined whether this mutation leads to altered ubiquitination of huntingtin and other proteins in both soluble and insoluble fractions of brain lysates of the Q175 knock-in Huntington’s disease mouse model and the Q20 wild-type mouse model. Ubiquitination sites are detected by identification of Gly-Gly (diGly) remnant motifs that remain on modified lysine residues after digestion. We identified K6, K9, K132, K804 and K837 as endogenous ubiquitination sites of soluble huntingtin, with wild-type huntingtin being mainly ubiquitinated at K132, K804 and K837. Mutant huntingtin protein levels were strongly reduced in the soluble fraction while K6 and K9 were mainly ubiquitinated. In the insoluble fraction increased levels of huntingtin K6 and K9 diGly sites were observed for mutant huntingtin as compared to wild type. Besides huntingtin, proteins with various roles, including membrane organization, transport, mRNA processing, gene transcription, translation, catabolic processes and oxidative phosphorylation, were differently expressed or ubiquitinated in wild-type and mutant huntingtin brain tissues. Correlating protein and diGly site fold changes in the soluble fraction revealed that diGly site abundances of the majority of the proteins were not related to protein fold changes, indicating that these proteins were differentially ubiquitinated in the Q175 mice. In contrast, both the fold change of the protein level and diGly site level were increased for several proteins in the insoluble fraction, including ubiquitin, ubiquilin-2, sequestosome-1/p62 and myo5a. Our data sheds light on putative novel proteins involved in different cellular processes as well as their ubiquitination status in Huntington’s disease, which forms the basis for further mechanistic studies to understand the role of differential ubiquitination of huntingtin and ubiquitin-regulated processes in Huntington’s disease.

Sap, K.A., Guler, A.T., Bezstarosti, K., Bury, A.E., Juenemann, K., Demmers, J., and Reits, E. Global Proteome and Ubiquitinome Changes in the Soluble and Insoluble Fractions of Q175 Huntington Mice Brains. 06508. 2019 Mol Cell Proteomics.

Concepts Keywords
Brain Neurodegeneration
Catabolic Ubiquitin
Differential Neurological disorders
Digestion Protein structure
Endogenous Huntington’s disease
Gly Huntingtin
Huntingtin Proteins
Huntington Branches of biology
Intracellular Disease
K9 Proteomics
Lysine
Membrane
Mice
MRNA
Mutant
Mutation
Oxidative Phosphorylation
Protein
Proteomics
Transcription
Ubiquitin
Ubiquitinated
Ubiquitination
Wild Type

Semantics

Type Source Name
gene UNIPROT SLC35G1
pathway BSID Neurodegenerative Diseases
disease MESH Neurodegenerative
gene UNIPROT FBN1
gene UNIPROT TNFSF14
gene UNIPROT MYO5A
gene UNIPROT KHDRBS1
gene UNIPROT DCTN4
gene UNIPROT GTF2H1
gene UNIPROT SQSTM1
gene UNIPROT NUP62
pathway BSID Oxidative phosphorylation
pathway BSID Translation
pathway BSID mRNA Processing
drug DRUGBANK L-Lysine
drug DRUGBANK Glycine

Similar

Original Article

Leave a Comment

Your email address will not be published. Required fields are marked *