Overview of the features and architecture of Glowing Bear and tranSMART

Overview of the features and architecture of Glowing Bear and tranSMART

Publication date: Nov 05, 2019

Glowing Bear is a cohort selection user interface for the TranSMART clinical data warehouse. In recent years, features for several use cases have been added: time series data, standard ontologies, family relations, sample-level lab data. Meanwhile, the structure of the platform has been transformed to be more modular and maintainable. We give an overview of the added features and the changes to the data model and architecture.

Presented at the i2b2 tranSMART Foundation 2019 Fall European Symposium on 9 October 2019 in TcFCbingen, Germany. https://transmartfoundation.org/tubingen-2019/

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Concepts Keywords
API JSON
Biomarker Swagger
Cohort OpenAPI Specification
Database Schema Extract, transform, load
Germany Database
Healthcare Data management
Heart Attack Information technology management
HL7 Translational medicine
Hypercube TranSMART
JSON Digital technology
Maintainability Computing
Metadata Healthcare andresearch dataI
Netherlands API
Ontologies
Ontology
Osteoarthritis
Python
REST
Scalability
SPSS
Star Schema
Testability

Semantics

Type Source Name
gene UNIPROT REST
gene UNIPROT SIRPA
disease DOID osteoarthritis
disease MESH osteoarthritis
disease DOID heart attack
disease MESH heart attack
disease MESH multi
drug DRUGBANK Alpha-1-proteinase inhibitor
gene UNIPROT LRRC15
gene UNIPROT TNFRSF19
gene UNIPROT GUCY2C
gene UNIPROT STAR
disease MESH separated
gene UNIPROT LAT2

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