Model genotype-phenotype mappings and the algorithmic structure of evolution.

Model genotype-phenotype mappings and the algorithmic structure of evolution.

Publication date: Nov 29, 2019

Cancers are complex dynamic systems that undergo evolution and selection. Personalized medicine approaches in the clinic increasingly rely on predictions of tumour response to one or more therapies; these predictions are complicated by the inevitable evolution of the tumour. Despite enormous amounts of data on the mutational status of cancers and numerous therapies developed in recent decades to target these mutations, many of these treatments fail after a time due to the development of resistance in the tumour. The emergence of these resistant phenotypes is not easily predicted from genomic data, since the relationship between genotypes and phenotypes, termed the genotype-phenotype (GP) mapping, is neither injective nor functional. We present a review of models of this mapping within a generalized evolutionary framework that takes into account the relation between genotype, phenotype, environment and fitness. Different modelling approaches are described and compared, and many evolutionary results are shown to be conserved across studies despite using different underlying model systems. In addition, several areas for future work that remain understudied are identified, including plasticity and bet-hedging. The GP-mapping provides a pathway for understanding the potential routes of evolution taken by cancers, which will be necessary knowledge for improving personalized therapies.

Nichol, D., Robertson-Tessi, M., Anderson, A.R.A., and Jeavons, P. Model genotype-phenotype mappings and the algorithmic structure of evolution. 05728. 2019 J R Soc Interface (16):160.

Concepts Keywords
Dynamic Systems Genotype
Evolution Genotype–phenotype distinction
Fitness Genotype
Genotype Bet hedging
Genotypes Fitness
Hedging Phenotype
Injective Population genetics
Phenotype Polymorphism
Phenotypes Genetics
Plasticity Evolutionary biology
Tumour Branches of biology
Dynamic systems

Semantics

Type Source Name
disease MESH Cancers
disease MESH development
gene UNIPROT DNER

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