Structure-Based Design and In-Silico Evaluation of Computationally Proposed Curcumin Derivatives as Potential Inhibitors of the Coronaviral PLpro Enzymes.

Publication date: May 26, 2025

Background/Objectives: Highly pathogenic coronaviruses (CoVs), including SARS-CoV, MERS-CoV, and SARS-CoV-2, continue to pose a significant threat to global public health. Therefore, this situation highlights the urgent need for effective broad-spectrum antiviral agents. Curcumin, a naturally occurring polyphenol known for its antiviral and anti-inflammatory properties, faces limitations such as poor bioavailability and rapid metabolic degradation, restricting its practical therapeutic application. Methods: To address these limitations, this study introduces a novel design strategy aimed at 42 new curcumin derivatives with improved pharmacokinetic profiles, specifically targeting the conserved coronavirus enzyme papain-like protease (PLpro). A comprehensive in silico evaluation was performed, including ADMET (Absorption, Distribution, Metabolism, Elimination, and Toxicity) analysis, molecular docking, molecular dynamics (MD) simulations, and Molecular Mechanics/Poisson-Boltzmann Surface Area (MM/PBSA) calculations. Results: Extensive pharmacokinetic and toxicological assessments (ADMET analyses) identified 19 derivatives exhibiting optimal drug-like characteristics according to Lipinski’s Rule of Five (Ro5). Molecular docking analyses demonstrated that these novel derivatives possess significantly enhanced binding affinities to PLpro enzymes from SARS-CoV, MERS-CoV, and SARS-CoV-2 compared to standard antiviral agents and natural curcumin. Further validation through MD simulations and MM/PBSA calculations confirmed the structural stability and robust interactions of the most promising derivatives within the SARS-CoV PLpro active site. Conclusions: The results of this study provide essential structural and functional insights, reinforcing the potential of these newly developed curcumin derivatives as potent, broad-spectrum antiviral agents effective against current and future coronavirus threats.

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Concepts Keywords
Antiviral ADMET property
Bioavailability antiviral agent
Coronaviruses bioavailability
Future coronavirus
Pharmaceuticals curcumin derivative
MM/PBSA analysis
molecular docking
molecular dynamics
papain-like protease

Semantics

Type Source Name
drug DRUGBANK Curcumin
drug DRUGBANK Papain
pathway REACTOME Metabolism
disease IDO site
disease MESH respiratory tract infections
disease MESH Severe Acute Respiratory Syndrome
disease MESH Middle East Respiratory Syndrome
disease MESH COVID 19
disease MESH viral diseases
pathway KEGG Viral replication
pathway REACTOME Immune System
disease IDO host
disease IDO immune response
drug DRUGBANK Didanosine
drug DRUGBANK Teriflunomide
drug DRUGBANK Cordycepin
drug DRUGBANK Riboprine
disease IDO process
disease MESH uncertainty
disease IDO protein
drug DRUGBANK Isoxaflutole
drug DRUGBANK Chlorine
drug DRUGBANK Lopinavir
pathway REACTOME Intestinal absorption
drug DRUGBANK Water
drug DRUGBANK Coenzyme M
disease MESH drug interaction
pathway KEGG Drug metabolism
disease MESH CNS diseases
pathway REACTOME Glucuronidation
drug DRUGBANK Omeprazole
disease MESH bile
disease MESH renal insufficiency
disease MESH respiratory diseases
drug DRUGBANK Favipiravir
drug DRUGBANK Chloroquine
drug DRUGBANK Warfarin
drug DRUGBANK Hydroxychloroquine
drug DRUGBANK Amino acids
drug DRUGBANK Activated charcoal
disease IDO algorithm
drug DRUGBANK Flunarizine
disease IDO production
drug DRUGBANK Methionine
drug DRUGBANK (S)-Des-Me-Ampa
disease MESH pneumonia
disease MESH Clinical progression
disease MESH viral load
drug DRUGBANK Troleandomycin
drug DRUGBANK Gold
drug DRUGBANK Guanosine
disease MESH Neuroinflammation
disease MESH Neurodegenerative Diseases
pathway REACTOME Neurodegenerative Diseases
disease MESH Alzheimer Disease
pathway KEGG Alzheimer disease
drug DRUGBANK Diethylstilbestrol
drug DRUGBANK Isoquinoline
drug DRUGBANK Adenosine
disease IDO replication
drug DRUGBANK Forodesine
drug DRUGBANK Apocynin
drug DRUGBANK Nonoxynol-9
disease MESH Tumor
pathway KEGG ABC transporters
drug DRUGBANK Carboxyamidotriazole
drug DRUGBANK Elacridar
disease MESH liver disease
drug DRUGBANK Clofarabine
disease MESH hyperuricemia
drug DRUGBANK Saccharin
disease IDO assay
disease MESH long COVID
drug DRUGBANK Ranitidine

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