Ketodarolutamide may interact with the receptor-binding domain of the SARS-CoV-2 spike glycoprotein: the importance of halogenated benzonitrile.

Publication date: Jul 07, 2026

Emerging pathogens such as SARS-CoV-2 are always the cause of extremely high morbidity and mortality. Despite a shared history with humanity spanning more than half a decade, COVID-19 treatment is still challenging, especially in people with comorbidities. The RBD of the S-glycoprotein is a promising target because it plays a key role in the tropism of SARS-CoV-2. Using AutoDock Vina together with a bash script FDA-approved compounds were virtually screened for their binding affinity to the RBD pocket, which was identified in our previous work. Nine promising compounds were selected based on the noncovalent interaction pattern and were studied by short molecular dynamics simulation. Bicalutamide and ketodarolutamide formed sufficiently stable complexes and were studied by longer molecular dynamics. Ketodarolutamide was the only ligand whose parameters had acceptable values for a potential RBD inhibitor. A characteristic component of both compounds was halogenated benzonitrile, which in the case of ketodarolutamide stabilized the complex. Further ELISA also partially confirmed the inhibitory effect of ketodarolutamide on the RBD/hACE2 interaction, which is consistent with known reports of a milder course of COVID-19 in patients on antiandrogen therapy. We suggest that ketodarolutamide can be considered as a promising scaffold for the development of a benzonitrile-containing RBD inhibitor.

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Concepts Keywords
Bash Drug repurposing
Decade MM/PBSA
Elisa Molecular dynamics simulation
Glycoprotein RBD
Mortality SARS-CoV-2
Virtual screening

Semantics

Type Source Name
disease MESH COVID-19
drug DRUGBANK Bicalutamide
pathway REACTOME Reproduction
disease MESH included
drug DRUGBANK Coenzyme M
disease MESH chronic diseases
pathway KEGG Virion
disease MESH prostate cancer
pathway KEGG Prostate cancer
drug DRUGBANK Amino acids
drug DRUGBANK Aspartame
drug DRUGBANK Water
drug DRUGBANK Dimethyl sulfoxide
drug DRUGBANK Propranolol
drug DRUGBANK Cinoxacin
drug DRUGBANK Metipranolol
drug DRUGBANK Nefazodone
drug DRUGBANK Cladribine
drug DRUGBANK Methocarbamol
drug DRUGBANK Metaxalone
drug DRUGBANK Isoxaflutole
drug DRUGBANK Oxygen
drug DRUGBANK Nitrogen
drug DRUGBANK Pyrazole
disease MESH dissociation
drug DRUGBANK Chlorine
disease MESH plan
disease MESH emergencies
drug DRUGBANK Nonoxynol-9
disease MESH Cancers
disease MESH Infection
disease MESH Park
disease MESH Cognitive Dysfunction
disease MESH Dis

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